Welcome to the BEERS 2 documentation

Please refer to the README.md https://github.com/itmat/BEERS2/blob/main/README.md file for introductory usage instructions.

User Guide

• Introduction
• Configuring
  • Cluster Execution
• Input
• Output
• Installation
• Example Dataset

The API Reference

• API Reference
  • Library Prep
  • Sequence
  • FastQ and SAM generation

Indices and tables

• Index

• Module Index